|
Tuesday |
Thursday |
| 8/23 & 8/25 |
Thomas T, Gilbert J, Meyer F. Metagenomics-a guide from sampling to data analysis. Microbial informatics and experimentation. 2012 Feb 9;2(1):1.
Grice EA, Segre JA. The skin microbiome. Nature Reviews Microbiology. 2011 Apr 1;9(4):244-53. |
Vos RA. Ten simple rules for managing high-throughput nucleotide sequencing data. bioRxiv. 2016 Jan 1:049338. |
| 8/30 & 9/1 |
Lynch MD, Neufeld JD. Ecology and exploration of the rare biosphere. Nature Reviews Microbiology. 2015 Apr 1;13(4):217-29. |
see schedule for links to the gitbook |
| 9/6 & 9/8 |
Metzker ML. Sequencing technologies—the next generation. Nature reviews genetics. 2010 Jan 1;11(1):31-46.
Hodkinson BP, Grice EA. Next-generation sequencing: a review of technologies and tools for wound microbiome research. Advances in wound care. 2015 Jan 1;4(1):50-8. |
see schedule for links to the gitbook |
| 9/13 & 9/15 |
Kodama Y, Shumway M, Leinonen R. The Sequence Read Archive: explosive growth of sequencing data. Nucleic acids research. 2012 Jan 1;40(D1):D54-6.
Hannigan GD, Meisel JS, Tyldsley AS, Zheng Q, Hodkinson BP, SanMiguel AJ, Minot S, Bushman FD, Grice EA. The human skin double-stranded DNA virome: topographical and temporal diversity, genetic enrichment, and dynamic associations with the host microbiome. MBio. 2015 Oct 30;6(5):e01578-15. |
see schedule for links to the gitbook |
| 9/20 & 9/22 |
Gomez-Alvarez V, Teal TK, Schmidt TM. Systematic artifacts in metagenomes from complex microbial communities. The ISME journal. 2009 Nov 1;3(11):1314-7. |
see schedule for links to the gitbook |
| 9/27 & 9/29 |
Li, Dinghua, et al. “MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph.”Bioinformatics (2016).
|
see schedule for links to the gitbook |
| 10/4 & 10/6 |
Albertsen M, Hugenholtz P, Skarshewski A, Nielsen KL, Tyson GW, Nielsen PH. Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nature biotechnology. 2013 Jun 1;31(6):533-8. |
see schedule for links to the gitbook |
| 10/11 & 10/13 |
Prokaryotic Gene Calling |
see schedule for links to the gitbook |
| 10/18 & 10/20 |
|
see schedule for links to the gitbook |
| 10/25 & 10/27 |
|
see schedule for links to the gitbook |
| 11/1 & 11/3 |
|
see schedule for links to the gitbook |
| 11/8 & 11/10 |
|
see schedule for links to the gitbook |
| 11/15 & 11/17 |
|
see schedule for links to the gitbook |
| 11/22 & 11/24 |
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– Holiday – |
